Tisged: a database for tissue-specific genes
WebPattern Gene Database (PaGenBase) is a free database that provides information of pattern genes (specific genes, selective genes, housekeeping genes and repressed genes) of 11 model organisms identified from serial gene expression profiles of multiple physiological conditions. PaGenBase has collected 143 quality microarray, NGS and tiling array … WebJun 9, 2008 · A large set of data on both tissue-specific genes and tissue-specific transcriptional regulatory elements: The database contains tissue-specific expression …
Tisged: a database for tissue-specific genes
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WebMar 28, 2014 · The criteria for selecting tissue-specific gene candidates were that the number of mapped reads should be more than 100 in the target tissue and less than 10 in the other tissues. We identified 30 tissue-specific genes, 10 genes from each sample, used them for RT-PCR. The tissue-specific genes and corresponding primers are shown in … WebApr 1, 2011 · VeryGene serves as a TSG-specific knowledgebase and a discovery tool to generate testable hypotheses for basic and clinical research. METHODS Although there …
Webthe tissue-specific genes database (TiSGeD), which particularly provides information of tissue-specific genes derived from literature and data mining of gene expression profiles. WebJul 28, 2016 · In Tissue-specific Genes Database (TiSGeD), a statistic specificity measure (SPM), was proposed to measure the specificity of genes (Xiao et al. 2010). Following this method, we transformed each expression profile of gene x into a vector Xp, then the tissue specificity of gene x in tissue i was determined by the ratio of vector Xi’s scalar ...
Web2 days ago · Phenotypic heterogeneity within the tumor-infiltrating CD4 + and CD8 + T cell compartments. Pre- and post-treatment TILs were isolated from tumor biopsies and subjected to combined single-cell RNA (scRNA-seq) and TCR sequencing (Figure 1 A).We obtained transcriptome data and TCR sequences from 33,190 individual lymphocytes, … http://bioinf.xmu.edu.cn/PaGeFinder/index.jsp
WebNov 2, 2012 · The query genes, in this study, were normal lung tissue specific genes from the Tissue-Specific Genes Database (TiSGeD). The genes of interest were candidate lung cancer genes from DDD [13, 14]. Surprisingly, this approach successfully distinguished 38 signature biomarkers for lung cancer. Thus this suggests that, in principle, this integrated ... gallaghers graphicsWebApr 26, 2024 · TiSGeD: A database for tissue-specific genes. Bioinformatics. 2010;26:1273–5. Article CAS Google Scholar Kim P, Park A, Han G, Sun H, Jia P, Zhao Z. TissGDB: Tissue-specific gene database in cancer. Nucleic Acids Res. 2024;46:D1031–8. Article CAS Google Scholar Tang Z, Kang B, Li C, Chen T, Zhang Z. GEPIA2: an enhanced … gallaghers groundworksWebTiGER is a database developed by the Bioinformatics Lab at Wilmer Eye Institute of Johns Hopkins University. The database contains tissue-specific gene expression profiles or … gallaghers golf club kelownaWebNov 1, 2024 · The TissueEnrich package is used to calculate enrichment of tissue-specific genes in a set of input genes. For example, the user can input the most highly expressed genes from RNA-Seq data, or gene co-expression modules to determine which tissue-specific genes are enriched in those datasets. Tissue-specific genes were defined by … gallaghers gp carlowWebObjective: Primary central nervous system lymphoma (PCNSL) is a specific type of non-Hodgkin lymphoma with poor prognosis. The rare incidence of this disease and difficulty to obtain sufficient tissue material impede deep research into PCNSL. However, application of modern molecular techniques makes it possible to find biological characteristics … black bumblebee arizonaWebSummary: The tissue-specific genes are a group of genes whose function and expression are preferred in one or several tissues/cell types. Identification of these genes helps better … gallaghers golf course kelowna bchttp://bioinfo.wilmer.jhu.edu/tiger/ black bumble bee