WebApr 14, 2024 · The NR database is a non-redundant protein database from the National Center for Biotechnology Information (NCBI). It contains non-redundant sequences translated from GenBank nucleic acid sequences, along with non-redundant sequences from other protein databases, including RefSeq, PDB, SwissProt, PIR, and PRF. WebNov 3, 2024 · Coverage of RefSeq non-redundant proteins hierarchical evidence rules. A single protein may be supported by evidence of multiple types; this table shows counts of proteins having the highest precedence evidence (not counting those proteins a second time if they also have a lower precedence evidence). The precedence scores shown …
RefSeq release 94 with MANE and RefSeq Select markup, protein …
WebSelecting a non-redundant representative subset of sequences is a common step in many bioinformatics workflows, such as the creation of non-redundant training sets for sequence and structural models or selection of "operational taxonomic units" from metagenomics data. ... Choosing non-redundant representative subsets of protein sequence data ... WebJan 1, 2005 · The RefSeq collection is unique in providing a curated, non-redundant, explicitly linked nucleotide and protein database representing significant taxonomic diversity. Genomic and protein sequence datasets are provided for the majority of organisms included; transcript records are currently provided for a subset of the … india travels online
(PDF) A comparison between Greengenes, SILVA, RDP, and
WebSuch proteins would be potential partners of ALDH3A1 interacting through their P1-like site. First we searched the STRING database but none of the suggested protein partners includes a P1-like sequence. Next, the BLASTp algorithm was utilized to search the PDB, UniProt, RefSeq, and non-redundant databases for proteins that contain the P1 sequence. WebMay 17, 2024 · Evidence information for prokaryotic RefSeq protein names. We are now providing information on how we determined the names for the non-redundant prokaryotic RefSeq proteins (WP_ accession prefix) . A new comment on the record, “Evidence-For-Name-Assignment”, contains the curated evidence used to assert the protein name. A new type of RefSeq protein record which represents non-redundant protein sequences was introduced in mid-2013. This record type was introduced to address a growing issue with redundancy in the Prokaryotic RefSeq protein dataset that coincided with a significant increase in bacterial genome … See more Related Information:Online displays of protein records present a navigation panel on the right side of the web page. The column facilitates access to analysis tools and provides easy access to related resources. Three of … See more This report can be accessed using the link provided at the top of the page in the Protein resource. The 'Display Settings' menu also provides … See more locking blocks for retaining wall